rs6200053 SNP Detail

Summary

• ID
  rs6200053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA ATGTGCAGGA CTGCCACTAG
  R
  GATACGTGGA GAGGCAAGAA AGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8605688	WI_WGS_2_165912093	WI	MOUSE	f	SNP								G		A
ss37515769	NES08880390	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A			A	G	A	A	A	G
ss45293825	mCV23741089	ABI	CRAMUS_MOUSE	f	SNP		G	A					G			A
ss148233731	ENSMUSSNP6638598	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6200053					SNP	G	G	A	G	A	A	A	G	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515769	NES08880390	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	268 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	1969 bp distal
Rr569777	regulatory region 569777	1285 bp distal
Rr569778	regulatory region 569778	478 bp distal
Rr569779	regulatory region 569779	1960 bp proximal
Tssr21693	transcription start site region 21693	1495 bp downstream