rs6200058 SNP Detail

Summary

• ID
  rs6200058
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC AGGACTGCCA CTAGGGATAC
  K
  TGGAGAGGCA AGAAAGTGTC TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8605693	WI_WGS_2_165912099	WI	MOUSE	f	SNP			G	T
ss45229794	mCV23741090	ABI	CRAMUS_MOUSE	f	SNP	G	T	G		T
ss148233736	ENSMUSSNP4521806	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6200058					SNP	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	274 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	1975 bp distal
Rr569777	regulatory region 569777	1291 bp distal
Rr569778	regulatory region 569778	484 bp distal
Rr569779	regulatory region 569779	1954 bp proximal
Tssr21693	transcription start site region 21693	1501 bp downstream