CCAGTCACCA AATGTCACAT TAATGAGGGG GAAGGGTAAG AAAGAGTTGT TGGGAACAGA AGAGTAAGAC AGAAGGTGGT AATTGGAGCA GAGAAGGAAG GACCCAGACC CGGGGCCAGT AAGAGGTCAA AAAGAGGGCA CGAGAAAGGA GTGTAGCCAA ATACAAGTCA GCACAAGCCA CCAGTGTCTC GGCCTCCACG M TGGCAGCCGG AGGGCGAGGA GGCGGGTCTT GGTTTGAGGC CCCGCCTTAT GCCGCGCCCT TCCTCGGATG ACCCCGCCCC ACTAAGAGGC GCCCAGGCCC CGCCTCCGAG CTCAGAGGCT CCTCCCTGCA CTCCGATCCC GGAAGCGAGC TCTGCTCCGC CTCTTCCGAG CTGGGTCGCG ACCTTGAGGC CGGGAATCGA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | C57BL/6J |
CZECHII/EiJ |
---|---|---|---|---|---|---|---|
ss8606010 | WI_WGS_5_52334923 | WI | MOUSE | f | SNP | A | C |
SNP Consensus Information | |||||||
SNP | Consensus Type | C57BL/6J |
CZECHII/EiJ |
||||
rs6200374 | SNP | A | C |
Location: Chr5:53424334 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi15867 | CpG island 15867 | within coordinates | ||||||
Gm40303 | predicted gene, 40303 | within coordinates | ||||||
Rr399079 | regulatory region 399079 | within coordinates | ||||||
Rr611581 | regulatory region 611581 | within coordinates | ||||||
Rr611582 | regulatory region 611582 | 323 bp proximal | ||||||
Rr611583 | regulatory region 611583 | 1021 bp proximal | ||||||
Smim20 | small integral membrane protein 20 | 114 bp upstream | ||||||
Tssr46209 | transcription start site region 46209 | 111 bp upstream | ||||||
Tssr46210 | transcription start site region 46210 | 138 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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