rs6200420 SNP Detail

Summary

• ID
  rs6200420
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGGT AAGAAAGAGT
  TGTTGGGAAC AGAAGAGTAA GACAGAAGGT GGTAATTGGA GCAGAGAAGG AAGGACCCAG
  ACCCGGGGCC AGTAAGAGGT CAAAAAGAGG GCACGAGAAA GGAGTGTAGC CAAATACAAG
  TCAGCACAAG CCACCAGTGT CTCGGCCTCC ACGATGGCAG CCGGAGGGCG AGGAGGCGGG
  K
  CTTGGTTTGA GGCCCCGCCT TATGCCGCGC CCTTCCTCGG ATGACCCCGC CCCACTAAGA
  GGCGCCCAGG CCCCGCCTCC GAGCTCAGAG GCTCCTCCCT GCACTCCGAT CCCGGAAGCG
  AGCTCTGCTC CGCCTCTTCC GAGCTGGGTC GCGACCTTGA GGCCGGGAAT CGAGTTTCCA
  AACGTGCGGG GGCCTTCGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606056	WI_WGS_5_52334950	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200420					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	within coordinates
Gm40303	predicted gene, 40303	within coordinates
Rr399079	regulatory region 399079	within coordinates
Smim20	small integral membrane protein 20	87 bp upstream
Tssr46209	transcription start site region 46209	84 bp upstream
Tssr46210	transcription start site region 46210	111 bp upstream