rs6200448 SNP Detail

Summary

• ID
  rs6200448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGGAAC AGAAGAGTAA
  GACAGAAGGT GGTAATTGGA GCAGAGAAGG AAGGACCCAG ACCCGGGGCC AGTAAGAGGT
  CAAAAAGAGG GCACGAGAAA GGAGTGTAGC CAAATACAAG TCAGCACAAG CCACCAGTGT
  CTCGGCCTCC ACGATGGCAG CCGGAGGGCG AGGAGGCGGG TCTTGGTTTG AGGCCCCGCC
  Y
  TATGCCGCGC CCTTCCTCGG ATGACCCCGC CCCACTAAGA GGCGCCCAGG CCCCGCCTCC
  GAGCTCAGAG GCTCCTCCCT GCACTCCGAT CCCGGAAGCG AGCTCTGCTC CGCCTCTTCC
  GAGCTGGGTC GCGACCTTGA GGCCGGGAAT CGAGTTTCCA AACGTGCGGG GGCCTTCGCC
  GGCTCTGCTG CCCCCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606085	WI_WGS_5_52334970	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200448					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	within coordinates
Gm40303	predicted gene, 40303	within coordinates
Rr399079	regulatory region 399079	within coordinates
Rr611581	regulatory region 611581	within coordinates
Rr611582	regulatory region 611582	276 bp proximal
Rr611583	regulatory region 611583	974 bp proximal
Smim20	small integral membrane protein 20	67 bp upstream
Tssr46209	transcription start site region 46209	64 bp upstream
Tssr46210	transcription start site region 46210	91 bp upstream