rs6200911 SNP Detail

Summary

• ID
  rs6200911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118106185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGCCA TGGCCCTTGG
  CTGGTGGTAG TGATGACTCT CCCAGGCTGC AGTGGGCTGA GCGACGTCAG AGCTCCCCCT
  GCGGGCTGAC AAACCAGGCT GCCCCAGCAT CCTCCACGCT TGCCGCCCCT GCTTGGTGGC
  TGCTCTGCCA GAGGCAGGAG CAGCAGAGGA GGAGAGAAGA AGGAAGGAGA AGAGAGGAGA
  R
  GAGAGGAGGC CGCACCAGCT ACTGCTGTGA TCCGGAGCCT ATCTCAGGGA AGCAGCGCAG
  TCTCCCTTCA GAGAGTTAGG TGGGTGCAGC CTTGCCCCTG CCCACCCCTG GGATCTCCCT
  TCTGCTTGTA CCTCTATCGG GCCAAAGGAG GCACATTAAG TTGGCTGTCT GTCCTTGCCT
  CCTTCCTAGA CTCTGTAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606550	WI_WGS_8_117377688	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200911					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118106185 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	14 bp distal
Rr670848	regulatory region 670848	1240 bp proximal
Tssr79606	transcription start site region 79606	61 bp downstream
Tssr79607	transcription start site region 79607	42 bp downstream