rs6201028 SNP Detail

Summary

• ID
  rs6201028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96143447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAAGGA TTAATTTATG
  TCATAGTGAC AAAAGAAATT TACCACCACA TGGGCCACGC CCACTTCTTC TCTTAAGCCA
  TATGAGCTGA ATTTAAAGGC AGAGGAATTT ATTTGTTTAT TTATTTATTT ACATCCCAGA
  GGCTTCTCCC CTCCCCCACC CTTGGACTCT GAGAGGGCAG GTCCTCCCCT CTCCCCCAGA
  Y
  ATCAAGTCTC TTCAGGATTA GGTGCAGTCT CTCCCATGAG TTCAGACAAG GCAGTCCTTT
  GCTACATAAG TGTTGGGGAC CTTCGACCAG CCTGTGTATG CTCTTTGGTC GGTGGCTCAG
  TCTCTGGGAG CTTCTAGGGG TCTGGTTAGT TGGTCTTCCT GTTGGGTTGC CGTCCACTTC
  AGGACTTTCA ATCCTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606667	WI_WGS_10_96529361	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201028					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96143447 () rs orientation: forward

Symbol	Name	Function Class
Gm33782	predicted gene, 33782	1496 bp upstream
Gm40748	predicted gene, 40748	within coordinates
Gm48427	predicted gene, 48427	within coordinates
Rr437855	regulatory region 437855	1175 bp proximal
Rr437856	regulatory region 437856	1749 bp proximal
Tssr99082	transcription start site region 99082	647 bp upstream