rs6201194 SNP Detail

Summary

• ID
  rs6201194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56283720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATCGGT CTGCGCGCGG
  GAGCTGCAGG GGTCCGGCCT CAGAAAGGTG CCTGTAGGTA GCGCGGCTCT GCAAGCGTCT
  GCTGTGAGCA CCTACTGTGT GTCTGGTGTC CCCTTGTCCC CAGTAGCCTC GTCCACAAAG
  AGGGAGGGTA GAACAATTGC TGTGACCAGG GATCTTCTTC TGCCCGGTCA GCACCAACTC
  Y
  GCGCCTCAAT CCAGCCTCCT GACTTTTTAA ATACAAGGCA GCTGTGTGCC CCAAGATCAG
  CTACCGTAGC TCAACTCCCT TGATCAGTGG GATTCTACAG AGCTGGCCTC AAAGTCTGGT
  CTTGCTTTGC TCGTGGAATC GGTTAGCTAC CTCCACCAAG CAAACGTTTG TTGACTACTG
  GCTCCAAGTG GAGACTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606834	WI_WGS_13_55623335	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201194					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56283720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	within coordinates
Macroh2a1	macroH2A.1 histone	281 bp upstream
Rr480641	regulatory region 480641	1511 bp distal
Rr480642	regulatory region 480642	388 bp distal
Rr480643	regulatory region 480643	within coordinates
Tssr122739	transcription start site region 122739	491 bp upstream
Tssr122740	transcription start site region 122740	469 bp upstream
Tssr122741	transcription start site region 122741	399 bp upstream
Tssr122742	transcription start site region 122742	369 bp upstream
Tssr122743	transcription start site region 122743	252 bp upstream
Tssr122744	transcription start site region 122744	239 bp upstream
Tssr122745	transcription start site region 122745	219 bp upstream
Tssr122746	transcription start site region 122746	97 bp upstream
Tssr122747	transcription start site region 122747	59 bp upstream
Tssr122748	transcription start site region 122748	within coordinates
Tssr122749	transcription start site region 122749	41 bp downstream
Tssr122750	transcription start site region 122750	175 bp downstream
Tssr122751	transcription start site region 122751	1269 bp downstream