rs6201521 SNP Detail

Summary

• ID
  rs6201521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96143535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTACCACCA
  CATGGGCCAC GCCCACTTCT TCTCTTAAGC CATATGAGCT GAATTTAAAG GCAGAGGAat
  ttatttgttt atttatttat ttaCAtccca gaggcttctc ccctccccca cccttggact
  ctgagagggc aggtcctccc ctctccccca ganatcaagt ctcttcagga ttaggtgcag
  tctctcccat gagttcagac aaggcagtcc tttgctacat aagtgttggg gaccttcgac
  Y
  agcctgtgta tgctctttgg tcggtggctc agtctctggg agcttctagg ggtctggtta
  gttggtcttc ctgttgggtt gccgtccact tcaggacttt caatccttcc cctaactctt
  ccataggggt ctttgacctc tgtccaatgt tttgggtgtg ggtatTGGAC AGAGGAATTC
  ttttaaaaaa aaaaaaaaaa aGCAAGTACT TGTCAGCTAA ATTCCCCTAA ATGACAGGCA
  GGGGAAACAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607161	WI_WGS_10_96529449	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201521					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96143535 () rs orientation: forward

Symbol	Name	Function Class
Gm33782	predicted gene, 33782	1408 bp upstream
Gm40748	predicted gene, 40748	within coordinates
Gm48427	predicted gene, 48427	within coordinates
Rr437855	regulatory region 437855	1087 bp proximal
Rr437856	regulatory region 437856	1661 bp proximal
Tssr99082	transcription start site region 99082	735 bp upstream