rs6201909 SNP Detail

Summary

• ID
  rs6201909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118106360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGGAA GGAGAAGAGA
  GGAGAAGAGA GGAGGCCGCA CCAGCTACTG CTGTGATCCG GAGCCTATCT CAGGGAAGCA
  GCGCAGTCTC CCTTCAGAGA GTTAGGTGGG TGCAGCCTTG CCCCTGCCCA CCCCTGGGAT
  CTCCCTTCTG CTTGTACCTC TATCGGGCCA AAGGAGGCAC ATTAAGTTGG CTGTCTGTCC
  Y
  TGCCTCCTTC CTAGACTCTG TAATTGTGTA TGGCTCCTCG GTTCCCCAGG GCGAGACCAG
  AGCTGCTGGT TAGAGTCCCT GCTGAGCATT CTGATCTTTT GTCACGCAGT GTGTCACGAT
  AGTCGATAAT CGAGCATTGG CCCTCGGGTG GGAAGGGACC TGAGGGATAG CAGTCAGGTA
  GGCTAAAGGG TCACAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607550	WI_WGS_8_117377863	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201909					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118106360 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	189 bp distal
Rr670848	regulatory region 670848	1065 bp proximal
Tssr79606	transcription start site region 79606	236 bp downstream
Tssr79607	transcription start site region 79607	217 bp downstream