rs6201991 SNP Detail

Summary

• ID
  rs6201991
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139410861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TGAGAAGTCT GGGTTTTGTT
  W
  TTGTTATACT GTGTTTTATT TTCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8607632	WI_WGS_1_140356037	WI	MOUSE	f	SNP			A	T
ss45029903	mCV23214849	ABI	CRAMUS_MOUSE	f	SNP	A	T			A
ss145588309	ENSMUSSNP6415729	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6201991					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139410861 () rs orientation: forward

Symbol	Name	Function Class
Aspm	abnormal spindle microtubule assembly	within coordinates
Tssr235	transcription start site region 235	399 bp upstream