rs6202066 SNP Detail

Summary

• ID
  rs6202066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGACAGTG TCTTCCCCAG TCTAGACTGG CCTGAAACTT
  ACTATGTGTG CTAGGATAGT CTCAATCTCT TGATTCTCCT GGTTCCCCAA TACAGATATG
  M
  GTTATCACTG CTGGCTCTAA AGTATAGTTT TGACTTAAGT TTTTATTGTT GTTTATAAAT
  AAGTCAAGAT GTGAAACGAC ATATCCTATG CAACACCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8607707	WI_WGS_2_127132010	WI	MOUSE	f	SNP			A	C
ss147495576	ENSMUSSNP5408603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6202066					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1450 bp proximal
Dtwd1	DTW domain containing 1	1756 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1592 bp upstream
Rr564315	regulatory region 564315	1168 bp proximal
Rr564316	regulatory region 564316	1609 bp proximal
Rr564317	regulatory region 564317	1741 bp proximal
Rr564318	regulatory region 564318	1767 bp proximal
Tssr19931	transcription start site region 19931	1746 bp upstream
Tssr19932	transcription start site region 19932	1780 bp upstream
Tssr26028	transcription start site region 26028	1571 bp downstream
Tssr26029	transcription start site region 26029	1583 bp downstream
Tssr26030	transcription start site region 26030	1630 bp downstream