rs6202101 SNP Detail

Summary

• ID
  rs6202101
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10160887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGACAATAGG
  CGCATCTGCA CCTCGGGGAG GGACATTGGC GGGGAGAGAG GCCTTTGAAC CCGGGATGCA
  AGCGCCTGAG AGACCGGAGC GGTAGACGGT GGCCGGAGAC ACGCACACTC AAACAAAGGG
  CTGGTTGCAC ATCCGTGCTT TGCCTCTGGA GTCTCAAGCA TGGGTTGGAT AGGAGGGAAT
  GAGCTTTCCA GGCACCCGTT CAACGGTACT TGCAACCTCC GGTGGTGGGA GGAGGAGTCT
  K
  AGCAGAGAGT GGGAGTCGCG TCCTGTCTGC CNGGCTAGGA GGGTGAACAC AGCCTTGTCT
  GACCTAGAGA ACTGGCCCTA AGTTGGGATT CGGAGCGGAA AGGAAGTGGG AAAGGACTGC
  TTGCGCTAGG GATGACACTG AGGACCCGGT GCTTGGGCAT CACCTGTACA TTGTGAAGCC
  CGGAGGGTAG GGTAATGAAC CTGAGCCGGT CCAAGACAGC TTGCAGTTGG AGTCGTAAAA
  CTGTACTCGG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607742	WI_WGS_19_9521571	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6202101					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10160887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	644 bp downstream
Tssr155025	transcription start site region 155025	627 bp downstream
Tssr155026	transcription start site region 155026	606 bp downstream
Tssr155027	transcription start site region 155027	554 bp downstream
Tssr155028	transcription start site region 155028	518 bp downstream
Tssr155029	transcription start site region 155029	487 bp downstream
Tssr155030	transcription start site region 155030	475 bp downstream
Tssr155031	transcription start site region 155031	367 bp downstream
Tssr155032	transcription start site region 155032	within coordinates
Tssr158164	transcription start site region 158164	54 bp upstream