rs6202105 SNP Detail

Summary

• ID
  rs6202105
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGCCTGA AACTTACTAT GTGTGCTAGG ATAGTCTCAA
  TCTCTTGATT CTCCTGGTTC CCCAATACAG ATATGAGTTA TCACTGCTGG CTCTAAAGTA
  K
  AGTTTTGACT TAAGTTTTTA TTGTTGTTTA TAAATAAGTC AAGATGTGAA ACGACATATC
  CTATGCAACA CCCTGTCCAG TTGGAAATTC TTCCCTAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607746	WI_WGS_2_127132035	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6202105					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1425 bp proximal
Dtwd1	DTW domain containing 1	1731 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1567 bp upstream
Rr564315	regulatory region 564315	1143 bp proximal
Rr564316	regulatory region 564316	1584 bp proximal
Rr564317	regulatory region 564317	1716 bp proximal
Rr564318	regulatory region 564318	1742 bp proximal
Tssr19931	transcription start site region 19931	1721 bp upstream
Tssr19932	transcription start site region 19932	1755 bp upstream
Tssr26028	transcription start site region 26028	1546 bp downstream
Tssr26029	transcription start site region 26029	1558 bp downstream
Tssr26030	transcription start site region 26030	1605 bp downstream