rs6202180 SNP Detail

Summary

• ID
  rs6202180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTTATC ACAAACCTAT
  GAAGAATTCA TTTTTACCGG ATTATGTTCT GGGGATACAA GAATTCAAGA ACCAAGGGAG
  GCCATCGATT CATCATATAG AGAAAAATTT AAGGGAACAA GTATTTGCTA GAGGCTTTCA
  TGAAAGACTG TCCCTGGGCC TTTGGCATCA AGCCATCCTA GGATGGTAAC CATCTCTAGC
  R
  ACAGAGGTTG TGGGCATCTC GCGGTAAGGC TCACATTGGC TAAGGGAGGC AAAAACTCCT
  GCGGAGCAGG CCTTGCCTCT TCTCTGCCTG CTACTTTCCT CTCTACTAGC CCAGTCTCTA
  GACACTAGAT GCTCAATAAA TGCGGACCCA AATCCGTCAC TGAGCCCCAG CGCGTTATTA
  TGGAGTGAGC GGGTTTATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607821	WI_WGS_8_93594394	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6202180					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536476 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1846 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Gnao1	guanine nucleotide binding protein, alpha O	737 bp upstream
Rr667832	regulatory region 667832	within coordinates
Rr667833	regulatory region 667833	432 bp proximal
Rr667834	regulatory region 667834	1066 bp proximal
Rr667835	regulatory region 667835	1476 bp proximal
Tssr78791	transcription start site region 78791	617 bp upstream
Tssr78792	transcription start site region 78792	704 bp upstream
Tssr78793	transcription start site region 78793	724 bp upstream
Tssr78794	transcription start site region 78794	923 bp upstream
Tssr78795	transcription start site region 78795	942 bp upstream
Tssr78796	transcription start site region 78796	959 bp upstream
Tssr78797	transcription start site region 78797	971 bp upstream
Tssr78798	transcription start site region 78798	984 bp upstream
Tssr78799	transcription start site region 78799	1040 bp upstream
Tssr78800	transcription start site region 78800	1082 bp upstream
Tssr78801	transcription start site region 78801	1142 bp upstream
Tssr78802	transcription start site region 78802	1235 bp upstream
Tssr78803	transcription start site region 78803	1435 bp upstream
Tssr78804	transcription start site region 78804	1474 bp upstream
Tssr82468	transcription start site region 82468	377 bp downstream