rs6202209 SNP Detail

Summary

• ID
  rs6202209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAATACAG ATATGAGTTA TCACTGCTGG CTCTAAAGTA
  TAGTTTTGAC TTAAGTTTTT ATTGTTGTTT ATAAATAAGT CAAGATGTGA AACGACATAT
  S
  CTATGCAACA CCCTGTCCAG TTGGAAATTC TTCCCTAGAC TCCAACCACT CATCAGGATT
  TGGCTTCATG GACTCCCCCA GCCTCTTTTG AGGTTCCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8607850	WI_WGS_2_127132095	WI	MOUSE	f	SNP							C	G
ss37632633	NES09013395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G			G	C	C	C	C	G	C
ss147495591	ENSMUSSNP2935530	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6202209					SNP	C	C	C	C	C	G	C	G	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37632633	NES09013395	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1365 bp proximal
Dtwd1	DTW domain containing 1	1671 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1507 bp upstream
Rr564315	regulatory region 564315	1083 bp proximal
Rr564316	regulatory region 564316	1524 bp proximal
Rr564317	regulatory region 564317	1656 bp proximal
Rr564318	regulatory region 564318	1682 bp proximal
Tssr19931	transcription start site region 19931	1661 bp upstream
Tssr19932	transcription start site region 19932	1695 bp upstream
Tssr26028	transcription start site region 26028	1486 bp downstream
Tssr26029	transcription start site region 26029	1498 bp downstream
Tssr26030	transcription start site region 26030	1545 bp downstream