rs6202352 SNP Detail

Summary

• ID
  rs6202352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118106412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCCGGA GCCTATCTCA
  GGGAAGCAGC GCAGTCTCCC TTCAGAGAGT TAGGTGGGTG CAGCCTTGCC CCTGCCCACC
  CCTGGGATCT CCCTTCTGCT TGTACCTCTA TCGGGCCAAA GGAGGCACAT TAAGTTGGCT
  GTCTGTCCTT GCCTCCTTCC TAGACTCTGT AATTGTGTAT GGCTCCTCGG TTCCCCAGGG
  Y
  GAGACCAGAG CTGCTGGTTA GAGTCCCTGC TGAGCATTCT GATCTTTTGT CACGCAGTGT
  GTCACGATAG TCGATAATCG AGCATTGGCC CTCGGGTGGG AAGGGACCTG AGGGATAGCA
  GTCAGGTAGG CTAAAGGGTC ACAGCCCAGG GGTTGTGGTC TAGTGGAAGC GCCGTGGGCC
  TGTTGCAGAA TAACAGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8607994	WI_WGS_8_117377915	WI	MOUSE	f	SNP							C		T
ss51982060	NES14997517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6202352					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982060	NES14997517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118106412 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	241 bp distal
Rr670848	regulatory region 670848	1013 bp proximal
Tssr79606	transcription start site region 79606	288 bp downstream
Tssr79607	transcription start site region 79607	269 bp downstream