rs6202505 SNP Detail

Summary

• ID
  rs6202505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118106496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCTCCCT TCTGCTTGTA
  CCTCTATCGG GCCAAAGGAG GCACATTAAG TTGGCTGTCT GTCCTTGCCT CCTTCCTAGA
  CTCTGTAATT GTGTATGGCT CCTCGGTTCC CCAGGGCGAG ACCAGAGCTG CTGGTTAGAG
  TCCCTGCTGA GCATTCTGAT CTTTTGTCAC GCAGTGTGTC ACGATAGTCG ATAATCGAGC
  W
  TTGGCCCTCG GGTGGGAAGG GACCTGAGGG ATAGCAGTCA GGTAGGCTAA AGGGTCACAG
  CCCAGGGGTT GTGGTCTAGT GGAAGCGCCG TGGGCCTGTT GCAGAATAAC AGAGGTCCGG
  GAGTGTTTTG CAGTGAGCAT GAGTACTGCA GCCACCGGCC TCTGTGGTGA CGTGAGTTCA
  GGTTTAATTG ATGCTATTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8608147	WI_WGS_8_117377999	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6202505					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118106496 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	325 bp distal
Rr670848	regulatory region 670848	929 bp proximal
Tssr79606	transcription start site region 79606	372 bp downstream
Tssr79607	transcription start site region 79607	353 bp downstream