rs6202562 SNP Detail

Summary

• ID
  rs6202562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10160919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GGAGTCGCGT CCTGTCTGCC
  R
  GGCTAGGAGG GTGAACACAG CCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8608204	WI_WGS_19_9521603	WI	MOUSE	f	SNP				A	G
ss45012875	mCV23260285	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146041205	ENSMUSSNP1746902	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss325720071	CHEV_19_10258045	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6202562					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10160919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	676 bp downstream
Tssr155025	transcription start site region 155025	659 bp downstream
Tssr155026	transcription start site region 155026	638 bp downstream
Tssr155027	transcription start site region 155027	586 bp downstream
Tssr155028	transcription start site region 155028	550 bp downstream
Tssr155029	transcription start site region 155029	519 bp downstream
Tssr155030	transcription start site region 155030	507 bp downstream
Tssr155031	transcription start site region 155031	399 bp downstream
Tssr155032	transcription start site region 155032	9 bp downstream
Tssr158164	transcription start site region 158164	86 bp upstream