rs6203172 SNP Detail

Summary

• ID
  rs6203172
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGGGAA CAAGTATTTG
  CTAGAGGCTT TCATGAAAGA CTGTCCCTGG GCCTTTGGCA TCAAGCCATC CTAGGATGGT
  AACCATCTCT AGCGACAGAG GTTGTGGGCA TCTCGCGGTA AGGCTCACAT TGGCTAAGGG
  AGGCAAAAAC TCCTGCGGAG CAGGCCTTGC CTCTTCTCTG CCTGCTACTT TCCTCTCTAC
  K
  AGCCCAGTCT CTAGACACTA GATGCTCAAT AAATGCGGAC CCAAATCCGT CACTGAGCCC
  CAGCGCGTTA TTATGGAGTG AGCGGGTTTA TCCTGACCCA CTACCTCCTC ACATCTGCGG
  AGGCACCATA GCTCGACTAG GGGCTACACC TCCAGCCGCG AAGGAGAACA ATCGGTAAGG
  CGATCTGCCG GAGACACGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8608815	WI_WGS_8_93594501	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203172					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536583 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1739 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Gnao1	guanine nucleotide binding protein, alpha O	630 bp upstream
Rr667832	regulatory region 667832	within coordinates
Rr667833	regulatory region 667833	325 bp proximal
Rr667834	regulatory region 667834	959 bp proximal
Rr667835	regulatory region 667835	1369 bp proximal
Tssr78791	transcription start site region 78791	510 bp upstream
Tssr78792	transcription start site region 78792	597 bp upstream
Tssr78793	transcription start site region 78793	617 bp upstream
Tssr78794	transcription start site region 78794	816 bp upstream
Tssr78795	transcription start site region 78795	835 bp upstream
Tssr78796	transcription start site region 78796	852 bp upstream
Tssr78797	transcription start site region 78797	864 bp upstream
Tssr78798	transcription start site region 78798	877 bp upstream
Tssr78799	transcription start site region 78799	933 bp upstream
Tssr78800	transcription start site region 78800	975 bp upstream
Tssr78801	transcription start site region 78801	1035 bp upstream
Tssr78802	transcription start site region 78802	1128 bp upstream
Tssr78803	transcription start site region 78803	1328 bp upstream
Tssr78804	transcription start site region 78804	1367 bp upstream
Tssr82468	transcription start site region 82468	270 bp downstream