rs6203302 SNP Detail

Summary

• ID
  rs6203302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCTCTA GCGACAGAGG
  TTGTGGGCAT CTCGCGGTAA GGCTCACATT GGCTAAGGGA GGCAAAAACT CCTGCGGAGC
  AGGCCTTGCC TCTTCTCTGC CTGCTACTTT CCTCTCTACT AGCCCAGTCT CTAGACACTA
  GATGCTCAAT AAATGCGGAC CCAAATCCGT CACTGAGCCC CAGCGCGTTA TTATGGAGTG
  M
  GCGGGTTTAT CCTGACCCAC TACCTCCTCA CATCTGCGGA GGCACCATAG CTCGACTAGG
  GGCTACACCT CCAGCCGCGA AGGAGAACAA TCGGTAAGGC GATCTGCCGG AGACACGACC
  CAGAGCCCGA GGGACCAGGA AGCTGGAGGC TCAGGCCCAG GGCTGGGGAC CACCTGACCG
  CCGCGCTGGG GTTGACAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8608946	WI_WGS_8_93594582	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203302					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536664 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	1658 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Gnao1	guanine nucleotide binding protein, alpha O	549 bp upstream
Rr667832	regulatory region 667832	within coordinates
Rr667833	regulatory region 667833	244 bp proximal
Rr667834	regulatory region 667834	878 bp proximal
Rr667835	regulatory region 667835	1288 bp proximal
Tssr78791	transcription start site region 78791	429 bp upstream
Tssr78792	transcription start site region 78792	516 bp upstream
Tssr78793	transcription start site region 78793	536 bp upstream
Tssr78794	transcription start site region 78794	735 bp upstream
Tssr78795	transcription start site region 78795	754 bp upstream
Tssr78796	transcription start site region 78796	771 bp upstream
Tssr78797	transcription start site region 78797	783 bp upstream
Tssr78798	transcription start site region 78798	796 bp upstream
Tssr78799	transcription start site region 78799	852 bp upstream
Tssr78800	transcription start site region 78800	894 bp upstream
Tssr78801	transcription start site region 78801	954 bp upstream
Tssr78802	transcription start site region 78802	1047 bp upstream
Tssr78803	transcription start site region 78803	1247 bp upstream
Tssr78804	transcription start site region 78804	1286 bp upstream
Tssr82468	transcription start site region 82468	189 bp downstream