rs6203407 SNP Detail

Summary

• ID
  rs6203407
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15075966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCCCCAG CTCCTAAACA
  GATGCATACA CACACACACA CACACACACA CACTCGGATA GCAAGGAATG TGGCCCAAAT
  CAAATTCATA ACTTAAACCA TGAGGGTTTA TAAAAAACTT TTAGGGGGTG GGTTAATGTG
  ACTGTGCAGG TCTCCCCAAG GAACTCCGTA GATGCCAACA TCCTGTCTCA GTGTCAAAAG
  K
  TTGGGCATAC CCTCTCCTTC AGGCATCCAG TCACCTCCAG CAGCAGCACT GGCTGGGAAC
  CCTGTGTTTA CACGTAAGCC GGAGAGGGGC AGGTCACACT CGAACCATCT CAGCACTTGT
  GTAATGGTGT GTGTGTAGAG CAGGTTATGA CACATGTAAG GAGAGCACCT GAATGCGTCT
  TCTCCCTTGC CTAGGGGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609051	WI_WGS_8_15035587	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203407					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15075966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1282 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	344 bp proximal
Rr660169	regulatory region 660169	1438 bp proximal
Tssr76486	transcription start site region 76486	1201 bp upstream
Tssr76487	transcription start site region 76487	1220 bp upstream
Tssr76488	transcription start site region 76488	1333 bp upstream
Tssr76489	transcription start site region 76489	1416 bp upstream
Tssr76490	transcription start site region 76490	1793 bp upstream
Tssr76491	transcription start site region 76491	1992 bp upstream
Tssr80488	transcription start site region 80488	1654 bp downstream