rs6203506 SNP Detail

Summary

• ID
  rs6203506
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32747907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCGCCA TGAGGGAGAT
  GAAGGTGGCA CTGGCGCTGA CTCTGCTGCG CTTCCGCGTC CTGCCAGGTG ACAAGGAGCC
  TCGCCGGAAG CCAGAGCTGA TCCTGCGCGC AGAGGGCGGG CTGTGGCTGC GGGTGGAGCC
  TCTGAGCAAG GGCACTCAGT GACCAGATCT ACTACTGTCC CAGTCACTTT CCTCTGCCAA
  K
  CCCAGAGTAA GCGGAGTTTC ACCCAGAGCC ATCAGAGGGC GCTGCAGGAC AACAGAGGCT
  GTCTGGAAGC TTGGCTGAGA AGAGACTGGG GCTGCTGTCT GAGTCCAAGG GCCTTTCTGG
  GTAGCCCACA GGGCCTGCAG ACTGATGAGA GTTCCATGCA CCCCAGCTCA AGAACGGCCT
  TTATTCTTTT GGCGATAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609150	WI_WGS_17_31751732	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203506					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32747907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8980	CpG island 8980	13 bp distal
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr405183	regulatory region 405183	within coordinates
Rr525770	regulatory region 525770	25 bp proximal