rs6203517 SNP Detail

Summary

• ID
  rs6203517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130065025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAACTCATG
  GTAGGACACA TAAGGTCCTT TTATTCCTAG CACCTCGAAA TATAAGAGGG GGAAAAAGCA
  GTCCTAGACT CTTCAGTTTA AAAAGgcatc catggctagc atggtagctc atgtctttaa
  tcccagcact tgggaggtag gcagatgagg gtttgagact agcacagtta acatatcaaa
  ttccaggcca actacacctg atttagaccc tgccttccaa aaaaaaaagg ggggggggaG
  Y
  ACAAAGGCCA TCTTTAGTAT GTTCCAAAAT AACTTAAAAG GAGATGAAGG TGGAAACTGA
  GTGAAAGGAC AGGTAAGAGG AGGCAGAGGA GTCACTGTAG AGCAGTGGGC ACACAGTAAA
  CAGTTTTTGC TTTCACGTGT TTTTAAGTTG TTTTACATTA TTTAGAAAAA CTAAATCCTG
  TTTATAGACA GGACAGGTCT CTCAAGTGTC TACTTGTTCT TTCTTCTATG AAGGCCTCAT
  GGGTTTGGCA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609161	WI_WGS_7_120400493	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203517					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130065025 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75149	transcription start site region 75149	590 bp upstream
Tssr75150	transcription start site region 75150	535 bp downstream