rs6203720 SNP Detail

Summary

• ID
  rs6203720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTTGG CACATACGCA
  GATACCCAGA TATCTACTAA AACTGCCCTA AGGGTTAAAT GATCTTAAGT CTCTCACCTA
  CCTCCTAGAG ATGTGTATTT AAGGGGCTAC AAGCCAGGCC CAACAGTGAT GACCACAACA
  TGCCATCTGA GTTGCTTTGC TGAAATCCAG AGGCTGTTTC TGAGCTGTGC CTGGTCCTGT
  R
  CTCTATGAGT AGTGGGTGAG CTCTGGGGGT CATCTTAGGA TTCAAATGTC AGCGGGCTTG
  ACCTCAGGTG GCTTTGCCAA CTGAGTGGAA GACTGCTGTT GTCCCACCTA GGGAAGTGTG
  GTAGAGATCT GTAATCTGGG AGAAAGACTG CTTCCCCTTA ACCTTCCCCT GCATCTTCTG
  TAGGATGAGA GTCATTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8609364	WI_WGS_11_49162683	WI	MOUSE	f	SNP						A		G
ss37219189	NES08451696	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G		A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6203720					SNP	A	A	A	A	A	A	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219189	NES08451696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694047 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	46 bp distal
Snord95	small nucleolar RNA, C/D box 95	14 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1111 bp downstream
Tssr101142	transcription start site region 101142	1411 bp downstream
Tssr101143	transcription start site region 101143	924 bp downstream
Tssr101144	transcription start site region 101144	868 bp downstream
Tssr101145	transcription start site region 101145	202 bp upstream