rs6203801 SNP Detail

Summary

• ID
  rs6203801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113064179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGA GGCGGAGTCT GAGGACACGG
  R
  CCAATTGAGC CGGAGCCCCA GCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8609445	WI_WGS_13_110525190	WI	MOUSE	f	SNP							G		A
ss52694590	NES15543282	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		G		G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6203801					SNP	G	A	G	G	G	G	G	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52694590	NES15543282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113064179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6101	CpG island 6101	within coordinates
Dhx29	DExH-box helicase 29	within coordinates
Mtrex	Mtr4 exosome RNA helicase	265 bp upstream
Rr280952	regulatory region 280952	within coordinates
Rr369777	regulatory region 369777	53 bp downstream
Tssr121155	transcription start site region 121155	within coordinates
Tssr124081	transcription start site region 124081	255 bp upstream
Tssr124082	transcription start site region 124082	175 bp upstream
Tssr124083	transcription start site region 124083	5 bp upstream