rs6203827 SNP Detail

Summary

• ID
  rs6203827
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10161198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGACTGC TTGCGCTAGG
  GATGACACTG AGGACCCGGT GCTTGGGCAT CACCTGTACA TTGTGAAGCC CGGAGGGTAG
  GGTAATGAAC CTGAGCCGGT CCAAGACAGC TTGCAGTTGG AGTCGTAAAA CTGTACTCGG
  ATTCTTAGTG CGAGGTCACT TGGGCCAGGG AGGTCGACTA TTGAGGGAAT AGGGCTCCCG
  S
  GCGATTAGAC ACTTCGCGGG GTCGCGTCCC TTTTCCGTTG TAGCTTACTG AAGGAAGAGT
  CAGTACGAAC CCCAGCTTCT GTCTAGTGGC CCTGTTTTCT CTTTTTAGAC CATATCCTCC
  CTCAGAGGCG AGGGCCGGAC TAGGAATGAC TTAGGACAGA GCATTCTTTG ACAGGATTGT
  CATCTGTTGG GTCTCTACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609471	WI_WGS_19_9521882	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203827					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10161198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	955 bp downstream
Tssr155025	transcription start site region 155025	938 bp downstream
Tssr155026	transcription start site region 155026	917 bp downstream
Tssr155027	transcription start site region 155027	865 bp downstream
Tssr155028	transcription start site region 155028	829 bp downstream
Tssr155029	transcription start site region 155029	798 bp downstream
Tssr155030	transcription start site region 155030	786 bp downstream
Tssr155031	transcription start site region 155031	678 bp downstream
Tssr155032	transcription start site region 155032	288 bp downstream
Tssr158164	transcription start site region 158164	365 bp upstream