rs6203833 SNP Detail

Summary

• ID
  rs6203833
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125992642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGCAAGG TGTAAAGATG ACAATAACAA AGCCAAAAAT
  TGAAAGGGCT AACAATTAAA AGTCAAATAT CCCATTTTCT GATGTTCAGG CCCTCACTGT
  K
  TGATGCCTAA CTGTGATGTT GTGCACAAAT AACTAAAGCT TAATTCCTAA GGCAGGTAGA
  CATGTCAATG TGGGTCTCAA AGTAGACTCT CAACTGTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8609477	WI_WGS_2_127132347	WI	MOUSE	f	SNP							T	G
ss37632632	NES09013396	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G			G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6203833					SNP	T	T	T	T	T	G	T	G	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37632632	NES09013396	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125992642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	1113 bp proximal
Dtwd1	DTW domain containing 1	1419 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	1255 bp upstream
Rr564315	regulatory region 564315	831 bp proximal
Rr564316	regulatory region 564316	1272 bp proximal
Rr564317	regulatory region 564317	1404 bp proximal
Rr564318	regulatory region 564318	1430 bp proximal
Tssr19931	transcription start site region 19931	1409 bp upstream
Tssr19932	transcription start site region 19932	1443 bp upstream
Tssr26028	transcription start site region 26028	1234 bp downstream
Tssr26029	transcription start site region 26029	1246 bp downstream
Tssr26030	transcription start site region 26030	1293 bp downstream