rs6203922 SNP Detail

Summary

• ID
  rs6203922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATCAAA TTCATAACTT
  AAACCATGAG GGTTTATAAA AAACTTTTAG GGGGTGGGTT AATGTGACTG TGCAGGTCTC
  CCCAAGGAAC TCCGTAGATG CCAACATCCT GTCTCAGTGT CAAAAGTTTG GGCATACCCT
  CTCCTTCAGG CATCCAGTCA CCTCCAGCAG CAGCACTGGC TGGGAACCCT GTGTTTACAC
  R
  TAAGCCGGAG AGGGGCAGGT CACACTCGAA CCATCTCAGC ACTTGTGTAA TGGTGTGTGT
  GTAGAGCAGG TTATGACACA TGTAAGGAGA GCACCTGAAT GCGTCTTCTC CCTTGCCTAG
  GGGGACAAGT GATTCTCTAC ATAAGTGTCA GGCCGAGCCG GCTCTGCTCT TCCTAGTCAA
  CCTCTTCAGA AGGCTAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609566	WI_WGS_8_15035661	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6203922					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1208 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	270 bp proximal
Rr660169	regulatory region 660169	1364 bp proximal
Tssr76486	transcription start site region 76486	1127 bp upstream
Tssr76487	transcription start site region 76487	1146 bp upstream
Tssr76488	transcription start site region 76488	1259 bp upstream
Tssr76489	transcription start site region 76489	1342 bp upstream
Tssr76490	transcription start site region 76490	1719 bp upstream
Tssr76491	transcription start site region 76491	1918 bp upstream
Tssr80488	transcription start site region 80488	1580 bp downstream