rs6204289 SNP Detail

Summary

• ID
  rs6204289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10161232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGTGCTT GGGCATCACC
  TGTACATTGT GAAGCCCGGA GGGTAGGGTA ATGAACCTGA GCCGGTCCAA GACAGCTTGC
  AGTTGGAGTC GTAAAACTGT ACTCGGATTC TTAGTGCGAG GTCACTTGGG CCAGGGAGGT
  CGACTATTGA GGGAATAGGG CTCCCGCGCG ATTAGACACT TCGCGGGGTC GCGTCCCTTT
  Y
  CCGTTGTAGC TTACTGAAGG AAGAGTCAGT ACGAACCCCA GCTTCTGTCT AGTGGCCCTG
  TTTTCTCTTT TTAGACCATA TCCTCCCTCA GAGGCGAGGG CCGGACTAGG AATGACTTAG
  GACAGAGCAT TCTTTGACAG GATTGTCATC TGTTGGGTCT CTACATTTGG GTCCATCTCC
  CTTTTAACTA CCTAATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8609933	WI_WGS_19_9521916	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6204289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10161232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	989 bp downstream
Tssr155025	transcription start site region 155025	972 bp downstream
Tssr155026	transcription start site region 155026	951 bp downstream
Tssr155027	transcription start site region 155027	899 bp downstream
Tssr155028	transcription start site region 155028	863 bp downstream
Tssr155029	transcription start site region 155029	832 bp downstream
Tssr155030	transcription start site region 155030	820 bp downstream
Tssr155031	transcription start site region 155031	712 bp downstream
Tssr155032	transcription start site region 155032	322 bp downstream
Tssr158164	transcription start site region 158164	399 bp upstream