rs6204445 SNP Detail

Summary

• ID
  rs6204445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAT GGTGTGTGTG TAGAGCAGGT
  Y
  ATGACACATG TAAGGAGAGC ACCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8610090	WI_WGS_8_15035733	WI	MOUSE	f	SNP									T								C
ss16377775	08.015.081	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	C	T	C	C	C	T	C	C	T	T	C	T	C	T	T	T	T	T	T
ss46284363	mCV25113000	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss148695673	ENSMUSSNP5877958	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6204445					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	C	T	C	C	C	T	C	C	T	T	C	T	C	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1136 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	198 bp proximal
Rr660169	regulatory region 660169	1292 bp proximal
Tssr76486	transcription start site region 76486	1055 bp upstream
Tssr76487	transcription start site region 76487	1074 bp upstream
Tssr76488	transcription start site region 76488	1187 bp upstream
Tssr76489	transcription start site region 76489	1270 bp upstream
Tssr76490	transcription start site region 76490	1647 bp upstream
Tssr76491	transcription start site region 76491	1846 bp upstream
Tssr80488	transcription start site region 80488	1508 bp downstream