rs6204509 SNP Detail

Summary

• ID
  rs6204509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCCTGT CTCAGTGTCA
  AAAGTTTGGG CATACCCTCT CCTTCAGGCA TCCAGTCACC TCCAGCAGCA GCACTGGCTG
  GGAACCCTGT GTTTACACGT AAGCCGGAGA GGGGCAGGTC ACACTCGAAC CATCTCAGCA
  CTTGTGTAAT GGTGTGTGTG TAGAGCAGGT TATGACACAT GTAAGGAGAG CACCTGAATG
  Y
  GTCTTCTCCC TTGCCTAGGG GGACAAGTGA TTCTCTACAT AAGTGTCAGG CCGAGCCGGC
  TCTGCTCTTC CTAGTCAACC TCTTCAGAAG GCTAGAATAC AGCTGGACCA CAACAACCTG
  CCCCTCAGAT CGCCAGCAAG GCAGAGGCCA GTGTGTGCCA GGGCAGGAGA ACTCCGCCTA
  GTGTTCTTAG GGATTCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8610154	WI_WGS_8_15035763	WI	MOUSE	f	SNP			C	T
ss46260867	mCV25113001	ABI	CRAMUS_MOUSE	f	SNP	T	C	C		C
ss148695678	ENSMUSSNP1204398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6204509					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1106 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	168 bp proximal
Rr660169	regulatory region 660169	1262 bp proximal
Tssr76486	transcription start site region 76486	1025 bp upstream
Tssr76487	transcription start site region 76487	1044 bp upstream
Tssr76488	transcription start site region 76488	1157 bp upstream
Tssr76489	transcription start site region 76489	1240 bp upstream
Tssr76490	transcription start site region 76490	1617 bp upstream
Tssr76491	transcription start site region 76491	1816 bp upstream
Tssr80488	transcription start site region 80488	1478 bp downstream