rs6204730 SNP Detail

Summary

• ID
  rs6204730
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32748153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAACAG AGGCTGTCTG
  GAAGCTTGGC TGAGAAGAGA CTGGGGCTGC TGTCTGAGTC CAAGGGCCTT TCTGGGTAGC
  CCACAGGGCC TGCAGACTGA TGAGAGTTCC ATGCACCCCA GCTCAAGAAC GGCCTTTATT
  CTTTTGGCGA TAAGGAGGCA CTATAGATGT TTGAGCAGGA GAAATGCAAC GTTTACTGGC
  M
  GATTTGGGGC AGTTTTCTTT TTTCTTTTTT TTTTTCTTTT TTTTTTTTTT TTTTTGAGAC
  AGGGTCTCAG CTTTTAGTGG ATATAGCAGG CTGGCCTTTA ACTTGTAGCA AATCTCTGTC
  CTAACCACCA GAGCGGTGCA ATTAGAAATG GGCCACTGTG CCTGTCATAT CTGAAGGGCT
  GTTTATTAGA AATGAAGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8610376	WI_WGS_17_31751978	WI	MOUSE	f	SNP	C	A
ss325362246	CHEV_17_32666124	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6204730					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32748153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8980	CpG island 8980	259 bp distal
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr405183	regulatory region 405183	106 bp downstream
Rr525770	regulatory region 525770	200 bp distal