rs6204796 SNP Detail

Summary

• ID
  rs6204796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48694199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGGCTACAA
  GCCAGGCCCA ACAGTGATGA CCACAACATG CCATCTGAGT TGCTTTGCTG AAATCCAGAG
  GCTGTTTCTG AGCTGTGCCT GGTCCTGTNC TCTATGAGTA GTGGGTGAGC TCTGGGGGTC
  ATCTTAGGAT TCAAATGTCA GCGGGCTTGA CCTCAGGTGG CTTTGCCAAC TGAGTGGAAG
  ACTGCTGTTG TCCCACCTAG GGAAGTGTGG TAGAGATCTG TAATCTGGGA GAAAGACTGC
  Y
  TCCCCTTAAC CTTCCCCTGC ATCTTCTGTA GGATGAGAGT CATTCAGAAT GGGTGTCTTG
  TGTCCGCTTC TCCCCGAACA GCAGCAACCC TATCATCGTC TCCTGCGGAT GGGACAAGCT
  GGTCAAGGTA AGCTTCAAGC AAGGGCATAG CTCTGCCAAA AATCCCAAAT GTATTCCCAT
  TCCTCTCAGA TAGTGATGCA TTCTGATTTG GAATATTTAT GAACATTAGT TTGGCTTTGG
  CTTCTTATGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8610443	WI_WGS_11_49162835	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6204796					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48694199 () rs orientation: forward

Symbol	Name	Function Class
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	198 bp distal
Snord95	small nucleolar RNA, C/D box 95	166 bp downstream
Snord96a	small nucleolar RNA, C/D box 96A	1263 bp downstream
Tssr101142	transcription start site region 101142	1563 bp downstream
Tssr101143	transcription start site region 101143	1076 bp downstream
Tssr101144	transcription start site region 101144	1020 bp downstream
Tssr101145	transcription start site region 101145	50 bp upstream