rs6204976 SNP Detail

Summary

• ID
  rs6204976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCCAGT CACCTCCAGC
  AGCAGCACTG GCTGGGAACC CTGTGTTTAC ACGTAAGCCG GAGAGGGGCA GGTCACACTC
  GAACCATCTC AGCACTTGTG TAATGGTGTG TGTGTAGAGC AGGTTATGAC ACATGTAAGG
  AGAGCACCTG AATGCGTCTT CTCCCTTGCC TAGGGGGACA AGTGATTCTC TACATAAGTG
  Y
  CAGGCCGAGC CGGCTCTGCT CTTCCTAGTC AACCTCTTCA GAAGGCTAGA ATACAGCTGG
  ACCACAACAA CCTGCCCCTC AGATCGCCAG CAAGGCAGAG GCCAGTGTGT GCCAGGGCAG
  GAGAACTCCG CCTAGTGTTC TTAGGGATTC AGACACCCAC CCATACCTTC TTTGGTTGCC
  TTCATGCTAT TTGGCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8610623	WI_WGS_8_15035809	WI	MOUSE	f	SNP			T	C
ss148695683	ENSMUSSNP3238591	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6204976					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1060 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	122 bp proximal
Rr660169	regulatory region 660169	1216 bp proximal
Rr660170	regulatory region 660170	1987 bp proximal
Tssr76486	transcription start site region 76486	979 bp upstream
Tssr76487	transcription start site region 76487	998 bp upstream
Tssr76488	transcription start site region 76488	1111 bp upstream
Tssr76489	transcription start site region 76489	1194 bp upstream
Tssr76490	transcription start site region 76490	1571 bp upstream
Tssr76491	transcription start site region 76491	1770 bp upstream
Tssr80488	transcription start site region 80488	1432 bp downstream