rs6204980 SNP Detail

Summary

• ID
  rs6204980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGGATCC ACTACTGCTG
  CTGCCATTTT TTCCTCCTGG AGAAAAGAGA CGCCTGGAGA GAAAAGAAAC TGGTTTCAGA
  ACATTGAGGA CCAATTCCTG TCCCAACCTA GGCAGGCCCA CAATTCCAGC ATAGACAGTT
  TCAGTTCCCC AACCCCACCC CTCTAGTTCA GAGCCCTTTT CAAGGCCAAC AACCTGACTG
  S
  AGGCTCCAGG GCTGTTTACA CACTTTCAAT AGGAAAGAGT AGTCATTGTC CTGTCTCTTA
  AATGGGACAC TAGAAATGCC TCTGAAATGC CTGTTCTCAA AAATGCTAAC CCAAAAGGCA
  GAAAATTCCA TTTAAACAGA AGACATCTTA GATTCCCCCA AACACCTGCC CTTAATTAGT
  TAATGGATTT ATTTCTGTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8610627	WI_WGS_4_83987323	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6204980					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	1056 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	within coordinates
Rr594784	regulatory region 594784	211 bp proximal
Rr594785	regulatory region 594785	1197 bp proximal
Tssr1221	transcription start site region 1221	1396 bp upstream
Tssr37738	transcription start site region 37738	1340 bp upstream
Tssr42335	transcription start site region 42335	293 bp upstream
Tssr42336	transcription start site region 42336	110 bp upstream
Tssr42337	transcription start site region 42337	597 bp downstream
Tssr42338	transcription start site region 42338	619 bp downstream
Tssr42339	transcription start site region 42339	639 bp downstream
Tssr42340	transcription start site region 42340	1133 bp downstream
Tssr42341	transcription start site region 42341	1177 bp downstream