rs6205607 SNP Detail

Summary

• ID
  rs6205607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGACAG TTTCAGTTCC
  CCAACCCCAC CCCTCTAGTT CAGAGCCCTT TTCAAGGCCA ACAACCTGAC TGGAGGCTCC
  AGGGCTGTTT ACACACTTTC AATAGGAAAG AGTAGTCATT GTCCTGTCTC TTAAATGGGA
  CACTAGAAAT GCCTCTGAAA TGCCTGTTCT CAAAAATGCT AACCCAAAAG GCAGAAAATT
  Y
  CATTTAAACA GAAGACATCT TAGATTCCCC CAAACACCTG CCCTTAATTA GTTAATGGAT
  TTATTTCTGT AGGCTTTCTG AGACAGTATT TCTCTTTGTA ACAGTCCTGG CTAGCCAGGT
  TGGCCTGGAA CTCACCAGAC CTACCTGCCT TTGCCTCCCA AGTGCTAGAA TTAAAGATGG
  CCCTTGCTAT ACTTAGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611255	WI_WGS_4_83987451	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	928 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	61 bp distal
Rr594784	regulatory region 594784	83 bp proximal
Rr594785	regulatory region 594785	1069 bp proximal
Rr594786	regulatory region 594786	1984 bp proximal
Tssr1221	transcription start site region 1221	1268 bp upstream
Tssr37738	transcription start site region 37738	1212 bp upstream
Tssr42335	transcription start site region 42335	421 bp upstream
Tssr42336	transcription start site region 42336	238 bp upstream
Tssr42337	transcription start site region 42337	469 bp downstream
Tssr42338	transcription start site region 42338	491 bp downstream
Tssr42339	transcription start site region 42339	511 bp downstream
Tssr42340	transcription start site region 42340	1005 bp downstream
Tssr42341	transcription start site region 42341	1049 bp downstream