rs6205643 SNP Detail

Summary

• ID
  rs6205643
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCCT CTAGTTCAGA
  GCCCTTTTCA AGGCCAACAA CCTGACTGGA GGCTCCAGGG CTGTTTACAC ACTTTCAATA
  GGAAAGAGTA GTCATTGTCC TGTCTCTTAA ATGGGACACT AGAAATGCCT CTGAAATGCC
  TGTTCTCAAA AATGCTAACC CAAAAGGCAG AAAATTCCAT TTAAACAGAA GACATCTTAG
  M
  TTCCCCCAAA CACCTGCCCT TAATTAGTTA ATGGATTTAT TTCTGTAGGC TTTCTGAGAC
  AGTATTTCTC TTTGTAACAG TCCTGGCTAG CCAGGTTGGC CTGGAACTCA CCAGACCTAC
  CTGCCTTTGC CTCCCAAGTG CTAGAATTAA AGATGGCCCT TGCTATACTT AGTCTCTGCC
  TGTCTAAAGC CCAGGCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611291	WI_WGS_4_83987475	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205643					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587242 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14420	CpG island 14420			904 bp proximal
Plin2	perilipin 2			Intron
				Noncoding-Transcript-Variant
Rr594783	regulatory region 594783			85 bp distal
Rr594784	regulatory region 594784			59 bp proximal
Rr594785	regulatory region 594785			1045 bp proximal
Rr594786	regulatory region 594786			1960 bp proximal
Tssr1221	transcription start site region 1221			1244 bp upstream
Tssr37738	transcription start site region 37738			1188 bp upstream
Tssr42335	transcription start site region 42335			445 bp upstream
Tssr42336	transcription start site region 42336			262 bp upstream
Tssr42337	transcription start site region 42337			445 bp downstream
Tssr42338	transcription start site region 42338			467 bp downstream
Tssr42339	transcription start site region 42339			487 bp downstream
Tssr42340	transcription start site region 42340			981 bp downstream
Tssr42341	transcription start site region 42341			1025 bp downstream