rs6205688 SNP Detail

Summary

• ID
  rs6205688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119954148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCCAGC CCAGGACTCC
  CAAGCCAGGA GCTGGGTCAG AACCAGGGAA GGAGAGGAGA ACAATGTCCA AAGAAATTTC
  CGTCATCCAG CACACCAGCT CCTTTGAGAA GTCTGACCCA CCGGAGCAGC CCAGTGGCCT
  GGAGGAAGAC AAGCCCCCGG CCCAGTTCTC ATCCCCACCA CCTGCCCCGC ACGGACGCTC
  S
  GCTCACTCCC TGCAGCCAAG GTTGGTCCGG CAGCCCAACA TTCAGGTTCC AGAGATCCTC
  GTGACAGAAG AACCGGACAG GCCTGACACA GAGCCTGAGC CGCCCCCCAA GGAGCCTGAG
  AAGACAGAAG AATTCCAGTG GCCCCAGCGC AGCCAGACAC TGGCACAACT CCCAGCGGAG
  AAGCTGCCAC CCAAGAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611336	WI_WGS_4_118005537	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205688					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119954148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr38766	transcription start site region 38766			1797 bp downstream
Tssr38767	transcription start site region 38767			378 bp downstream
Tssr38768	transcription start site region 38768			234 bp upstream
Tssr38769	transcription start site region 38769			772 bp upstream
Tssr38770	transcription start site region 38770			949 bp upstream