rs6205723 SNP Detail

Summary

• ID
  rs6205723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119954163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCAAGC CAGGAGCTGG
  GTCAGAACCA GGGAAGGAGA GGAGAACAAT GTCCAAAGAA ATTTCCGTCA TCCAGCACAC
  CAGCTCCTTT GAGAAGTCTG ACCCACCGGA GCAGCCCAGT GGCCTGGAGG AAGACAAGCC
  CCCGGCCCAG TTCTCATCCC CACCACCTGC CCCGCACGGA CGCTCCGCTC ACTCCCTGCA
  R
  CCAAGGTTGG TCCGGCAGCC CAACATTCAG GTTCCAGAGA TCCTCGTGAC AGAAGAACCG
  GACAGGCCTG ACACAGAGCC TGAGCCGCCC CCCAAGGAGC CTGAGAAGAC AGAAGAATTC
  CAGTGGCCCC AGCGCAGCCA GACACTGGCA CAACTCCCAG CGGAGAAGCT GCCACCCAAG
  AAAAAGAGAC TCCGCCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611371	WI_WGS_4_118005552	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6205723					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119954163 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Tssr38766	transcription start site region 38766	1812 bp downstream
Tssr38767	transcription start site region 38767	393 bp downstream
Tssr38768	transcription start site region 38768	219 bp upstream
Tssr38769	transcription start site region 38769	757 bp upstream
Tssr38770	transcription start site region 38770	934 bp upstream