rs6206032 SNP Detail

Summary

• ID
  rs6206032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166838053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAAGGCC TAGCCCACCC
  GCCGCCCACC TCCCGCTGAC GCCGTGCCTG CGTGGGTCCT TCCGCGACCC GCTCCGACCC
  GGCCCGGACC GGCCGCCTTA CCTGGCTGCT TCCCCAGAGC TCGTCCCGGG GCCGGCGGTC
  TTGGGCGGCG GCGAGGAGGT GAAGAAGCAA GTGAAGACGG CGAGGAAAAA GGGACCGACC
  R
  GAGGAGGGAA GAGGCGGAGT GGCGGAGGCG AAGGCGGGCG CCGCCAGGCC GGGGCTCAGA
  AGAAGGGGGA GCGCACACAG ACGCGACGAC AGCCAGCGCA AACGCTGAAG AGCGGCTCGG
  GGCCCGCAGC CTGGCAGGAA GTGACGGGGG AGGGGCCGCG CCCGCCCCCG GCCCCCGCCC
  GCCTCCATGC CGGCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611681	WI_WGS_2_167964866	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206032					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166838053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	within coordinates
Rr40642	regulatory region 40642	1348 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	132 bp upstream
Stau1	staufen double-stranded RNA binding protein 1	within coordinates
Tssr27718	transcription start site region 27718	24 bp upstream
Tssr27719	transcription start site region 27719	14 bp downstream
Tssr27720	transcription start site region 27720	73 bp downstream
Tssr27721	transcription start site region 27721	88 bp downstream
Tssr27722	transcription start site region 27722	126 bp downstream