rs6206300 SNP Detail

Summary

• ID
  rs6206300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACCGAT GGGCCACTGG
  CTGGGTAGGC GCGGTGCTGC TCCCCCAGAG AAAAGTGCGA GTCTTGGTTG CACCACCAAC
  CTCTTCCAAA GACAACTCCC AGCCTGGCAA GGTCACATGG CGGGGCTCTG CAGCTGGACT
  TGACCCTTAG AAGAGCGATC TGTCTGCCCC AATCCTGGCC TGCAGCCTGG CTGGGAGATG
  R
  AGGCAGTTGG GTCTTAGCAA CCAGATACTT CATTTAGATA ATTCGAAGAT CCTTTTCCTT
  TTCTTACACC CCAGTTTGCA CCAGCGCTTG ACCATCATAA CCCCAGTGTC ATAAAAACAG
  GTTAAGACCC CCATATTGAG TTAGGGGAAC CCCTAGGGCG CGTTTTTTCC TCCTAGTCCA
  CACCCCACTT CCCCTCCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611949	WI_WGS_4_117395057	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206300					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	within coordinates
Rimkla	ribosomal modification protein rimK-like family member A	336 bp upstream
Rr598596	regulatory region 598596	1843 bp distal
Rr598597	regulatory region 598597	1923 bp distal
Rr598598	regulatory region 598598	within coordinates
Tssr43121	transcription start site region 43121	373 bp upstream
Tssr43122	transcription start site region 43122	316 bp upstream