rs6206320 SNP Detail

Summary

• ID
  rs6206320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83298173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAACCTG AATTTGTGAA
  CCTGCATCTC AGCCACTAGG TATCCTTAGC TGAACCACAG CCAGAAGAGG CTCAAGGCTA
  GACAGATCAA AGGACCAAAC CCTTTGAACT TTCCCAGCAA GGTTATTTCT AGTGACAGAG
  AATGAACAGG CCCAAGTCAG CTCTCAGCAA AGCAAAATGA GTTAACTTCG GGCAAATGTA
  Y
  CATTTTATAA AGTACTACTT TATAGCAGTG CTTTAAATGA CATACCACTG ACGGCTAGTA
  TGAGGTTTCG TCATCTGTAG GGGACAGCCT TGCTAGGTTT CTTATTTCTA GTCCCCCTCA
  AGCTGAAATG GACCTATGTC CTGAGGGAAG AACAGAAAGC CTGTATCCTC AGGCAAGATG
  AGGATGAAAG TTTTTTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8611969	WI_WGS_11_84058096	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206320					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83298173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	1776 bp proximal
Gm72478	predicted gene, 72478	513 bp downstream
Rasl10b	RAS-like, family 10, member B	1790 bp upstream
Rr452947	regulatory region 452947	1700 bp proximal
Rr452948	regulatory region 452948	1851 bp proximal
Tssr103692	transcription start site region 103692	1869 bp upstream