rs6206327 SNP Detail

Summary

• ID
  rs6206327
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38058326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAATTTTTGC AGTCCAGAAA AGGACAGAAA AAAAATCAGA AGAACAAGTC
  M
  GTTCCTACCG TAGACAGTGG GAATGAGGAC GATGACTCTT CCTTCAAAAT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8611976	WI_WGS_1_38525433	WI	MOUSE	f	SNP							C		A
ss47238924	NES11096916	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6206327					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238924	NES11096916	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38058326 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	875 bp proximal
Tssr6335	transcription start site region 6335	1383 bp downstream
Tssr6336	transcription start site region 6336	1368 bp downstream
Tssr6337	transcription start site region 6337	1185 bp downstream
Tssr6338	transcription start site region 6338	1161 bp downstream
Tssr6339	transcription start site region 6339	222 bp downstream
Tssr6340	transcription start site region 6340	196 bp downstream
Tssr6341	transcription start site region 6341	164 bp downstream
Tssr6342	transcription start site region 6342	136 bp downstream
Tssr6343	transcription start site region 6343	118 bp downstream
Tssr6344	transcription start site region 6344	82 bp downstream
Tssr6345	transcription start site region 6345	53 bp downstream
Tssr6346	transcription start site region 6346	2 bp downstream
Tssr6347	transcription start site region 6347	16 bp upstream
Tssr6348	transcription start site region 6348	164 bp upstream
Tssr6349	transcription start site region 6349	203 bp upstream