rs6206498 SNP Detail

Summary

• ID
  rs6206498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36897622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACATCT GGCCTGAGGA
  ACCGCAGTGA GGGACCTGCA AGCTGCTGGC GGAAGTGCTG CTTTAGGTCT GGCTTGAGCC
  ACTCCACAGC CACCTGCTCT CCACAGAGGC GTGACTGACC TGTCAAAAAA TAAAAAAAAA
  GGCAGAGAGA CAAGGGCAGA GTTAAACACT AGGAGCCGCA AGCACTTAAG ACCAGACTTT
  R
  AAGTGACTTG CCACAGGCTA TGTTTAATGC CTCTACACTT CTAGGTGGTG TGACAACTTC
  CCTGGGCTTC ATTATTCCCT AGGGGAATAC AAAGCAGTCA GGCTCTATTT GCTTAATAAC
  CATCACAATA GCTACCTTTC TGGTCAAAGA AAACTGAAAC TAAGATTTAT CACTGTTTAT
  CCTCCACTGT GGTACTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612148	WI_WGS_18_36951842	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206498					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36897622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	499 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	1959 bp downstream
Rr352751	regulatory region 352751	378 bp proximal
Tssr152972	transcription start site region 152972	1623 bp downstream
Tssr152973	transcription start site region 152973	1649 bp downstream
Wdr55	WD repeat domain 55	861 bp downstream