rs6206537 SNP Detail

Summary

• ID
  rs6206537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36897657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGCTG CTGGCGGAAG
  TGCTGCTTTA GGTCTGGCTT GAGCCACTCC ACAGCCACCT GCTCTCCACA GAGGCGTGAC
  TGACCTGTCA AAAAATAAAA AAAAAGGCAG AGAGACAAGG GCAGAGTTAA ACACTAGGAG
  CCGCAAGCAC TTAAGACCAG ACTTTGAAGT GACTTGCCAC AGGCTATGTT TAATGCCTCT
  M
  CACTTCTAGG TGGTGTGACA ACTTCCCTGG GCTTCATTAT TCCCTAGGGG AATACAAAGC
  AGTCAGGCTC TATTTGCTTA ATAACCATCA CAATAGCTAC CTTTCTGGTC AAAGAAAACT
  GAAACTAAGA TTTATCACTG TTTATCCTCC ACTGTGGTAC TGGCTGCATT AGCACGTCTG
  GAATTCACCT TTAATCCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8612187	WI_WGS_18_36951877	WI	MOUSE	f	SNP							A		C
ss49276181	NES12716406	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6206537					SNP	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276181	NES12716406	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36897657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	464 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	1924 bp downstream
Rr352751	regulatory region 352751	343 bp proximal
Tssr152972	transcription start site region 152972	1588 bp downstream
Tssr152973	transcription start site region 152973	1614 bp downstream
Wdr55	WD repeat domain 55	896 bp downstream