rs6206730 SNP Detail

Summary

• ID
  rs6206730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119954319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCACCAC CTGCCCCGCA
  CGGACGCTCC GCTCACTCCC TGCAGCCAAG GTTGGTCCGG CAGCCCAACA TTCAGGTTCC
  AGAGATCCTC GTGACAGAAG AACCGGACAG GCCTGACACA GAGCCTGAGC CGCCCCCCAA
  GGAGCCTGAG AAGACAGAAG AATTCCAGTG GCCCCAGCGC AGCCAGACAC TGGCACAACT
  Y
  CCAGCGGAGA AGCTGCCACC CAAGAAAAAG AGACTCCGCC TGGCTGAGAT GGCGCAGTCC
  TCGGGGGAGT CCAGCTTTGA GTCCTCCGTG CCTCTGTCTC GAAGCCCAAG CCAGGAGAGC
  AGCATTTCTC TGAGTGGCTC CAGCCGCTCG GCTTCATTCG ACAGGGAAGA CCATGGAAAA
  GCTGAGGCCC CTGGACCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8612380	WI_WGS_4_118005708	WI	MOUSE	f	SNP						C		T
ss37714103	NES09200021	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	C	T		C	C	T	C
ss147340965	ENSMUSSNP3008414	ENSEMBL	ENSEMBL_Sanger	f	SNP		C											T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6206730					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714103	NES09200021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119954319 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Tssr38766	transcription start site region 38766	1968 bp downstream
Tssr38767	transcription start site region 38767	549 bp downstream
Tssr38768	transcription start site region 38768	63 bp upstream
Tssr38769	transcription start site region 38769	601 bp upstream
Tssr38770	transcription start site region 38770	778 bp upstream