rs6206892 SNP Detail

Summary

• ID
  rs6206892
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38058459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAGAGCGCGA GAAGAAAAAG AGAGATGAAG AGAAAGCGAA GTTGCGGAAG
  M
  TGAAGGAGAA AGAAGAGCTA GAGAAGGGCA AGAAGGAGCA GAGTAAACAG           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612542	WI_WGS_1_38525566	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6206892					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38058459 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	742 bp proximal
Tssr6335	transcription start site region 6335	1516 bp downstream
Tssr6336	transcription start site region 6336	1501 bp downstream
Tssr6337	transcription start site region 6337	1318 bp downstream
Tssr6338	transcription start site region 6338	1294 bp downstream
Tssr6339	transcription start site region 6339	355 bp downstream
Tssr6340	transcription start site region 6340	329 bp downstream
Tssr6341	transcription start site region 6341	297 bp downstream
Tssr6342	transcription start site region 6342	269 bp downstream
Tssr6343	transcription start site region 6343	251 bp downstream
Tssr6344	transcription start site region 6344	215 bp downstream
Tssr6345	transcription start site region 6345	186 bp downstream
Tssr6346	transcription start site region 6346	135 bp downstream
Tssr6347	transcription start site region 6347	98 bp downstream
Tssr6348	transcription start site region 6348	31 bp upstream
Tssr6349	transcription start site region 6349	70 bp upstream