rs6207151 SNP Detail

Summary

• ID
  rs6207151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCCCCCAAAC
  ACCTGCCCTT AATTAGTTAA TGGATTTATT TCTGTAGGCt ttctgagaca gtatttctct
  ttgtaacagt cctggctagc caggttggcc tggaactcac cagacctacc tgcctttgcc
  tcccaagtgc tagaattaaa gatggccctt gctatactta gtctctGCCT GTCTAAAGCC
  CAGGCTGACT CTCTCTNCTC TACTTCACTA GTGTTGGTAT TAGGTACAGG CCACCATGCC
  K
  GGCTCTCAGC ATCAGGACTA TCAAACTGAT ACTTGAGGGT GTTTACCACT CTTGTGAACA
  AGATTGAAAC CAGCAGTGGC TGCCTTAATG CTGACTGAGC TCAAGAAAGT CNCTCCAGGG
  AACTGTAAAA TCTCCTATCC CCAGTGACCC ACACCCACAT GAAACTGCCT TCTGCCCAGC
  AACAGAACCT GTCTAGACTG CTCTGCCTCC AATCCAAAGT CCCAGTTCCT TAGGAAGAAC
  TGTCCAGAAA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612802	WI_WGS_4_83987727	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207151					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14420	CpG island 14420			652 bp proximal
Plin2	perilipin 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr594783	regulatory region 594783			337 bp distal
Rr594784	regulatory region 594784			within coordinates
Rr594785	regulatory region 594785			793 bp proximal
Rr594786	regulatory region 594786			1708 bp proximal
Tssr1221	transcription start site region 1221			992 bp upstream
Tssr37738	transcription start site region 37738			936 bp upstream
Tssr42335	transcription start site region 42335			697 bp upstream
Tssr42336	transcription start site region 42336			514 bp upstream
Tssr42337	transcription start site region 42337			193 bp downstream
Tssr42338	transcription start site region 42338			215 bp downstream
Tssr42339	transcription start site region 42339			235 bp downstream
Tssr42340	transcription start site region 42340			729 bp downstream
Tssr42341	transcription start site region 42341			773 bp downstream