rs6207288 SNP Detail

Summary

• ID
  rs6207288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAATCCT GGCCTGCAGC
  CTGGCTGGGA GATGGAGGCA GTTGGGTCTT AGCAACCAGA TACTTCATTT AGATAATTCG
  AAGATCCTTT TCCTTTTCTT ACACCCCAGT TTGCACCAGC GCTTGACCAT CATAACCCCA
  GTGTCATAAA AACAGGTTAA GACCCCCATA TTGAGTTAGG GGAACCCCTA GGGCGCGTTT
  Y
  TTCCTCCTAG TCCACACCCC ACTTCCCCTC CGCCCTCCAA CTCAGTCCTC TGTACATACT
  GTCCGTGGTC CTAGCCGTTT GCAAATTCTG CCCGCAAACA ATAGCGTGAA ACCTGGTATT
  CGGTTCTTGA AAATAAATTA ATTATACATT TATTTATGTA TGTATTTATG TATTTATTTA
  TTTATGTATT TATTTATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8612939	WI_WGS_4_117395223	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6207288					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	within coordinates
Rimkla	ribosomal modification protein rimK-like family member A	502 bp upstream
Rr598598	regulatory region 598598	within coordinates
Tssr43121	transcription start site region 43121	539 bp upstream
Tssr43122	transcription start site region 43122	482 bp upstream